PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30010.m000675
Common NameLOC8285898, RCOM_1225970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 652aa    MW: 70283.2 Da    PI: 6.3127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30010.m000675genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30362420259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  30010.m000675 362 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 420
                    7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.58.706.6E-4169233No hitNo description
Gene3DG3DSA:2.20.25.801.5E-33346422IPR003657WRKY domain
SuperFamilySSF1182901.28E-27354422IPR003657WRKY domain
PROSITE profilePS5081129.792356422IPR003657WRKY domain
SMARTSM007741.0E-36361421IPR003657WRKY domain
PfamPF031061.3E-26363420IPR003657WRKY domain
Gene3DG3DSA:1.20.58.706.6E-4537569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MAKGRSGLSI DSDLISSGFF IHKPPTVLNS FPEDHHHHHH QHSITAATLM DATAASAKSP  60
SPPSTIQFPV NLNSIHRHHH GNSNINEDDD LSLPSDHDYK RTAIDEMDFF AEKHHRDDDD  120
DDDVKPTNNT SPTIDDFKDP KSLGFDVNTG LNLLTTNTSS DQSMVDDGIS SNMEDKRAKN  180
ELAVLQAELE RMKVENLRLR DMLSQVTSNY NALQMHLVTL MQDQKQSRDE ITNGEEKKKH  240
NGNGTAVGPR QFMDLGLAAA TAGGAGGDTD ELSLSSSEGR SRDRSRSPGN NNNNNIEDGT  300
AFDQDKKGIN GGIEREDSPD QGWGSNKVAR FNSSKNSVDQ TEATIRKARV SVRARSEAPM  360
ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTILI TTYEGNHNHP  420
LPPAAMAMAS TTSSAARMLL SGSMSSADGI MNPNFLTRTI LPCSSSMATI SASAPFPTVT  480
LDLTQNPNPL QFQRQQTQFQ VPFPNPPQNF ANSPAAALLP QIFGQALYNQ SKFSGLQMSQ  540
DVEGNNKLGN QSQPGPIQQQ QQGQQNSLAD TVSAATAAIA ADPNFTAALA AAITSIIGGG  600
GGSNGGAHPS NITHITDNNN LTSTSNNNGN VTTTNNNSNA NNKITNSGFQ GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22348424176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524838.10.0PREDICTED: probable WRKY transcription factor 31 isoform X2
SwissprotQ9C5191e-151WRKY6_ARATH; WRKY transcription factor 6
TrEMBLB9SFR90.0B9SFR9_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0014s15320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-109WRKY family protein